rs219103631 SNP Detail

Summary

• ID
  rs219103631
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69416941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGA AAAGGGAAAG AAAAAGAACA
  R
  ATGGGGAAAG GGGAGCAAGG AAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320331728	CHEV_2_69424654	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219103631					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69416941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11710	CpG island 11710	91 bp distal
Cpgi11711	CpG island 11711	1373 bp proximal
Lrp2	low density lipoprotein receptor-related protein 2	568 bp upstream
Rr558427	regulatory region 558427	579 bp distal
Rr558428	regulatory region 558428	42 bp distal
Rr558429	regulatory region 558429	482 bp proximal
Rr558430	regulatory region 558430	959 bp proximal
Tssr24442	transcription start site region 24442	560 bp upstream