rs219098737 SNP Detail

Summary

• ID
  rs219098737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:27681790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGCTTCT CCGCAGCCGC
  AGTCCCGAGC TCAGCTACTG TGACAGCCGT CCGTGCTCCC GCCCTGAACG CAGACTGACG
  CCCGGTGCCG CCACTCAGAA GCTAGGGCGG AGTCTAGGGC GGAGCCTCCG CGCGAGGTAG
  GCGTGAAGGG CGCGGCGGCG TGGAAAGCTC AGAAGCTCAG CGATGGGAGC GCTGCGGAGG
  Y
  CGCGGCTCTG CCCCTAGGGC TGCACCTCCA CGCTCACCCT GGGCGTTCCA CTGGTTCGGA
  TCTAGAGTCC TCTCGGGAGC TCTGCACCAG AGCCAGAGAA CTTGGGGAAG AGACTGATGG
  GCCGAGGGAC CGAATGCCCC TCACCAGCTC AGGACAGCTT GGTGCCTCGA TTCCCTGTTC
  ACCACGGGAC AAACCTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393437308	MGP_WTSI_15_27611459	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs219098737					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393437308	MGP_WTSI_15_27611459	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:27681790 () rs orientation: forward

Symbol	Name	Function Class
C130098B18Rik	RIKEN cDNA C130098B18 gene	1621 bp upstream
Gm62492	predicted gene, 62492	within coordinates
Otulinl	OTU deubiquitinase with linear linkage specificity like	160 bp upstream
Rr390488	regulatory region 390488	1959 bp downstream
Rr500168	regulatory region 500168	203 bp distal
Rr500169	regulatory region 500169	9 bp distal
Rr500170	regulatory region 500170	within coordinates
Rr500171	regulatory region 500171	848 bp proximal
Tssr130895	transcription start site region 130895	28 bp downstream
Tssr133874	transcription start site region 133874	1546 bp upstream
Tssr133875	transcription start site region 133875	209 bp upstream
Tssr133876	transcription start site region 133876	150 bp upstream
Tssr133877	transcription start site region 133877	120 bp upstream