rs219086516 SNP Detail

Summary

• ID
  rs219086516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28045658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCCTCT TTATAGGAGA
  GGAACCTCAT AACCATGGTG GGCAGGGCAC GGGCGTGGCC TAGAGGAGGG AGAGCATCTG
  AGAAACAGCA TCATTACAGA GATGCTATAA GGTTGTCTTA GGAATCGCTG GCTTCTCTTT
  AAAACCTGAG GAGGGGCCTT GAGAGATGGC TCATTGGTTA CGAGCACTCA GTGCCTTTCC
  R
  AAGGTCCTGA GTCCAATGCC CAGCACCCAC ATGGCAGTTC ACTATGGTCT GATGCCATCC
  CTGGTGTGCA GTGTACATGA AGACAAAACA CTGATATACA TAAAATATAT ATAAATAAAG
  ACTGGGGATG AACCCGCTCT GCGGGCTCAA CTTTAATCCC GACACTTTGG GAGGCAGAGG
  CTGAGAGTTC TAAACTAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349856	CHEV_17_27963629	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219086516					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28045658 () rs orientation: forward

Symbol	Name	Function Class
Gm65125	predicted gene, 65125	within coordinates
Rr405125	regulatory region 405125	181 bp downstream
Rr405126	regulatory region 405126	573 bp upstream
Rr524320	regulatory region 524320	1407 bp distal
Rr524321	regulatory region 524321	within coordinates
Rr524322	regulatory region 524322	254 bp distal
Rr524323	regulatory region 524323	552 bp proximal
Tssr143360	transcription start site region 143360	1435 bp downstream
Tssr143361	transcription start site region 143361	1384 bp downstream
Tssr147072	transcription start site region 147072	640 bp upstream
Tssr147073	transcription start site region 147073	240 bp downstream