rs219038830 SNP Detail

Summary

• ID
  rs219038830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150170440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTC TCAAGTGCTG GGATTAAAGG
  Y
  GTGCGCCACT ACTTCCCGGC CTTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321428021	CHEV_4_149460092	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs219038830					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150170440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	1110 bp proximal
Gpr157	G protein-coupled receptor 157	1520 bp upstream
Rr398878	regulatory region 398878	1148 bp upstream
Rr605170	regulatory region 605170	314 bp distal
Rr605171	regulatory region 605171	396 bp distal
Rr605172	regulatory region 605172	892 bp proximal
Rr605173	regulatory region 605173	1730 bp proximal
Tssr40369	transcription start site region 40369	1530 bp upstream
Tssr40370	transcription start site region 40370	1663 bp upstream