rs219030426 SNP Detail

Summary

• ID
  rs219030426
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:51357026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCACAGT GCTGCTATAC
  CTTGGTGAGG TATAATGAGG GGGAGTGGAT GCTTGTGTTT GTAAGGGAAC CTATTCGACA
  GCCAGGTTTA ATTTCACATG GACATCCTAG GGGATGCCCT CTGGTTCTCA ATGTGAAAAA
  GCTTTGAGAA AAAGGTTTTG TTTTTTTTTT TTCCAGCTCT TATTCTGGAA CCCAGGACTG
  S
  AGTACAGGCA GGTGAGTGTC TCCAGCCATC CCAGAATTTG ATTCTTCACT CTGATGATAC
  AACCTCTAAT CTACTTTCTA GTGTGTAAAT TCCTCAAAAT GGTGATGGGG GATTGACATT
  TATGGGCTAA TGTCTTGTTC CATGGGTGTG TTCTGTGCTA AGATCTAGTG TCTGAAGGAA
  GATGTTCTGG GCTTTTGATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss380379565	MGP_WTSI_10_51200736	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs219030426					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379565	MGP_WTSI_10_51200736	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51357026 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm49339	predicted gene, 49339			Intron
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr431273	regulatory region 431273			262 bp distal
Tssr93232	transcription start site region 93232			675 bp downstream
Tssr93233	transcription start site region 93233			96 bp downstream
Tssr93234	transcription start site region 93234			80 bp downstream
Tssr93235	transcription start site region 93235			202 bp upstream
Tssr93236	transcription start site region 93236			688 bp upstream
Tssr93237	transcription start site region 93237			727 bp upstream
Tssr93238	transcription start site region 93238			751 bp upstream
Tssr93239	transcription start site region 93239			776 bp upstream
Tssr93240	transcription start site region 93240			793 bp upstream
Tssr93241	transcription start site region 93241			815 bp upstream
Tssr93242	transcription start site region 93242			855 bp upstream
Tssr93243	transcription start site region 93243			1648 bp upstream
Tssr93244	transcription start site region 93244			1914 bp upstream
Tssr97553	transcription start site region 97553			487 bp upstream