rs218962884 SNP Detail

Summary

• ID
  rs218962884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109506260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAGTTTG GGGCTGGGGT
  GGAGAGGGTA AGAGTGGGTT AGAGACTAAG AGTTTAGGTG AGGATAGTGG TGGAGTTGGG
  GGCGAGAGGA ATAAGTCAGA AGTGTCTATC TATAATGAAA TGGGTAATGC TCGCATACGT
  GGAAAGGGTC TCATCAACAT GTGATCAACT ATTAACAGGA TGGCTTTGGC AAAGCCATCC
  R
  CACGTGACAA AACGTAAGGA AGTGGAAGAA ACCGTCTAGA GCAATATCAA GTACCACTTA
  ATTAGAGAAT ATTTTTTTAA CCTTTTCCTC CTCCTGCGCC GGGTGTGTGA TCCCGGAGAG
  CAGAGTCCAT TCAGCACCTT GGACAGAGCC AGCGGATTTG TCCGAGGTGG TAGTACTTCA
  TCCAGGTATT CTTTTCCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355226215	MGP_WTSI_2_109516072	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218962884					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355226215	MGP_WTSI_2_109516072	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109506260 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bdnf	brain derived neurotrophic factor			Intron
				mRNA-UTR
Cpgi12032	CpG island 12032			1447 bp distal
Cpgi12033	CpG island 12033			104 bp proximal
Cpgi12034	CpG island 12034			1227 bp proximal
Gm20638	predicted gene 20638			1822 bp downstream
Gm45346	predicted gene 45346			within coordinates
Rr373669	regulatory region 373669			1148 bp upstream
Rr562477	regulatory region 562477			1205 bp distal
Rr562478	regulatory region 562478			912 bp distal
Rr562479	regulatory region 562479			811 bp distal
Rr562480	regulatory region 562480			8 bp distal
Rr562481	regulatory region 562481			627 bp proximal
Rr562482	regulatory region 562482			1128 bp proximal