rs218960602 SNP Detail

Summary

• ID
  rs218960602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148170282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATACAAC GGCCACCTGC TCTTCAGCGC AGCAGGGACT
  CTGTGGTAGA AGTGTGTCAA ACACTCAAAC ACAGCAGGCC GCATCGCTGC CCCCCCCCCC
  Y
  CACTGCTCCT CCCAGGGCTT CACAAGTCTA GTCCAACCTG AGCTGCTTCA GTTTAGCTCC
  TGCTTAAGAC AAGCAAGAAG CCCAGTTAGG GACCCGACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321416949	CHEV_4_147459934	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218960602					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148170282 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	Intron
Cpgi15288	CpG island 15288	1852 bp proximal
Rr377389	regulatory region 377389	within coordinates
Rr377390	regulatory region 377390	1728 bp upstream
Rr604582	regulatory region 604582	within coordinates
Rr604583	regulatory region 604583	1165 bp proximal
Tssr40250	transcription start site region 40250	27 bp upstream
Tssr44578	transcription start site region 44578	1531 bp upstream