rs218940738 SNP Detail

Summary

• ID
  rs218940738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114817945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTGCTGA AACCTCGAGA
  CTAAAGCATC CCACAGGGCT ACTCTTGCTA GGAAGAGGTT TTTATATCCC CCCACCACCA
  CCTGTCCATC TGCTTTCTTT TGTCTGAGAC CCTTTTGCTG TAGGGCAAAA GCCACCTCAA
  AAGAGACCTT GCATGTCCTT GCTGGAGTCA GTAGAGAACT GGGATGGGGA AGGCACTGGC
  R
  ACCATCTGCT GTGTTCTTGC CTTTCTCCTA ACTAAAATAG TCTGCAAAGT GATGGAGATG
  CTGGGGGGAT TCCTAGGGAC ACTCGTGAAT CATGGGCTCC AAGATGAGCT GACTGAGGTG
  CAGAGTTGTG CAGAGTAACG GAACTCTCCA CAGGGTTGGG AAAGGTCACT GAGTCCTCAT
  CCCAGGAGGA ACTGCACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914873	CHEV_6_114791002	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218940738					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114817945 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			682 bp upstream
Rr636840	regulatory region 636840			1723 bp distal
Rr636841	regulatory region 636841			503 bp distal