rs218916824 SNP Detail

Summary

• ID
  rs218916824
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116285884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTCTTT TTCTTGTTCT
  TCTTGTTCTC AAAGTCTATC TTACAGCCTA GGTTGGCCTG AAATGTGCTA CATAGACAGA
  GCTGGCCTCT GACTCTCAAG TGACAGGTGG CAGGTAATCA CTGCCATGCC TCATGTGAAT
  TACTTTTATA ATCTCAAAGA AAAGGCGGCA ACCCCATAAA ACTTGAGTCA CAATCTTACA
  R
  AATTATATTA GAGAATACAG TCATTGTGTG TGGTAGCTCC TGCTGCATCT AAGAACTCCC
  TGTAGGCTGA GGCCAGAGGA TCACAAGTTC TCCTGGTCTA CCCAGGAAGT TCAAGGCCAG
  GCCAAAATAT ATACTGAGGC CTTGACTAGT AAAACTAAAC TAAAACCATG CAAAAGAATA
  AAAATGAAAT TCCAAAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895282	CHEV_3_116195153	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218916824					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116285884 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583727	regulatory region 583727			1108 bp distal
Rr583728	regulatory region 583728			within coordinates
Rtca	RNA 3'-terminal phosphate cyclase			Intron
				Noncoding-Transcript-Variant