rs218886349 SNP Detail

Summary

• ID
  rs218886349
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97297058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGGAGT CAGGACCCTA
  AGTAACAGGA CCTGGCATTG GTGGAAAGTC TAGACTGGCA GACGCTGCCA ACCGCTCAGT
  GAGCGCTTTC ATTTATCTGG GAAGAGAGAA GAGAGAGGAG AGGGAGAGAG TTCACCGCGA
  AGTGGATGGA AGGGGAGCCG GGACTATGGC ACTGAGACCG GCGCAGAGCA GCTGCGCGCC
  S
  GAGGACGAAT CTCCTCCAGG AGGACCAGCG GGCGTCGGGA ACGGCTGCGC ACAGAGGAAT
  CAACTTGTGG CTCCAGACCG TCCCCAACGC AGCTGGAAAT GAGATCAAAG CTGCAGTTTC
  ATTCCAGAAG GATGAGAGGA GCCAGTGATT AGAGAATTTT TTTTAACCCT CTTCATTCCT
  GTTTCGTTAC CCCCCCCCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320413814	CHEV_2_97306870	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218886349					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97297058 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11965	CpG island 11965			within coordinates
Gm54117	predicted gene, 54117			within coordinates
Gm75348	predicted gene, 75348			within coordinates
Lrrc4c	leucine rich repeat containing 4C			Intron
				mRNA-UTR
Rr561447	regulatory region 561447			234 bp distal
Rr561448	regulatory region 561448			454 bp proximal
Rr561449	regulatory region 561449			955 bp proximal
Rr561450	regulatory region 561450			1471 bp proximal
Tssr19016	transcription start site region 19016			228 bp downstream
Tssr19017	transcription start site region 19017			763 bp upstream
Tssr19018	transcription start site region 19018			826 bp upstream
Tssr19019	transcription start site region 19019			862 bp upstream
Tssr19020	transcription start site region 19020			973 bp upstream