rs218847825 SNP Detail

Summary

• ID
  rs218847825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156148497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAGCCT CAGGAGTCCT
  CTTTGTGTAT AATCACTATA GGTAAGTGGG TATGGGGTAC AATGAGCCAG GTCCTGTGGC
  CTTGCTTGTC AGTTGAGCCA TTTCACAAAA CACACCAAGG CAGACTTCTG CCAGCTGCAG
  TGGGTGTCAG AATCTCTGAA GCCAGACAAA GGTTCGGTCT GGCCCACCTG CTGGGCAGGG
  Y
  AGCGTTACCA TGGCTGCAGA AGAGGGATAG TGGCTGGGAA TCTGTAAGGA AGCTGCTCTC
  CGGGGACCTT AAAGGCCTGG CTGCTCCCCT TTGTAGTCTC TCCTCAGAAG AAGGACTAGT
  CTGAGAGGGG TGTGGCAGAA ACCCCCACAT TAGTCTGATT TGGTGGCGTT GGCCTGAGGG
  AACCCAGCCC CCAGTCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445036	CHEV_4_155438149	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218847825					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156148497 () rs orientation: forward

Symbol	Name	Function Class
Gm52714	predicted gene, 52714	234 bp upstream
Rr377474	regulatory region 377474	within coordinates
Rr606657	regulatory region 606657	within coordinates
Rr606658	regulatory region 606658	317 bp proximal
Tssr40789	transcription start site region 40789	299 bp upstream