rs218802234 SNP Detail

Summary

• ID
  rs218802234
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132292489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGAACCCC TCTTTTCTGA GAGTGAGATG
  GAGCCATCTT AGCCTTAACT TCTgggaggc gatggtgagg acgggaggca agggcttaga
  ggtctgtgag cagacctcca tttgctttat tagctgtgtg actttggaga agttatacac
  T
  ttctctgtgT ATAATCAATG TCATCTCCCC AGCAGACTTT CCTGGGAGGC TGAGCTAAAG
  TGTCTGGGAT GGAGCTAGGT CCCCGGGACC ACACCCACTG CAGAGGATGT TGATAACTGG
  GTGGCTGGTA CAAAGGTCCA CAAAAGGTTG                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334511	CHEV_4_132121093	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218802234					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132292489 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	1101 bp distal
Rr601016	regulatory region 601016	881 bp distal
Rr601017	regulatory region 601017	1053 bp distal
Rr601018	regulatory region 601018	898 bp distal
Rr601019	regulatory region 601019	313 bp proximal
Tssr39381	transcription start site region 39381	1697 bp downstream
Tssr39382	transcription start site region 39382	1668 bp downstream
Tssr39383	transcription start site region 39383	1585 bp downstream
Tssr39384	transcription start site region 39384	1550 bp downstream
Tssr39385	transcription start site region 39385	1441 bp downstream
Tssr39386	transcription start site region 39386	1102 bp downstream
Tssr39387	transcription start site region 39387	1085 bp downstream
Tssr39388	transcription start site region 39388	968 bp downstream
Tssr39389	transcription start site region 39389	182 bp upstream