rs218799789 SNP Detail

Summary

• ID
  rs218799789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102109647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTTCA AGCAAAGCCT
  TTCCCCCTAG TAGATTCTGA AGCTTCAGCC ACCGCCTGAT GCACACCACA CATCCCATGG
  TGTTCTAAGG GGGATCTGGG ATGAGGGTGG AGGCAGAGCA GCAGAGGATG GAGGCAGTTT
  GCTTCTGCCT CCAGGAGGAC ACAGAGTACC AGAAACAGCC CAGCCACAGC CACCGAATCT
  Y
  GTCTTCCTCG TGGAAAGTGG CACAGTTAAC TGGCCACAGT TAGCTCACTC CACAGATATG
  GCGGCGATTA AGACTGAAGT CATTTGCATA AAATAGCTCA ATCTTCAGAA CAAGTCTTTA
  AGGGAGGCAA AATTGAATGT CATGGCACAG TTAAGGGGAC AAGGTCACAC ACACAAGCAA
  GTGCCCCCAT ATGGCTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320854815	CHEV_3_102006254	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218799789					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102109647 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13625	CpG island 13625			1278 bp proximal
Gm16160	predicted gene 16160			within coordinates
Rr582207	regulatory region 582207			806 bp proximal
Rr582208	regulatory region 582208			1622 bp proximal
Rr582209	regulatory region 582209			1725 bp proximal
Vangl1	VANGL planar cell polarity 1			Intron
				Noncoding-Transcript-Variant