rs218793623 SNP Detail

Summary

• ID
  rs218793623
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105707849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTT CCCAACGGCA ATACACTCAC
  T
  GTTTCTGAGC GGTAGCTCTT TTTCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863208	CHEV_3_105603451	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218793623					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105707849 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13662	CpG island 13662			83 bp proximal
Rap1a	RAS-related protein 1a			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Rr582779	regulatory region 582779			1356 bp distal
Rr582780	regulatory region 582780			875 bp distal
Rr582781	regulatory region 582781			within coordinates
Rr582782	regulatory region 582782			316 bp proximal
Rr582783	regulatory region 582783			742 bp proximal
Tssr34930	transcription start site region 34930			142 bp downstream
Tssr34931	transcription start site region 34931			766 bp downstream
Tssr34932	transcription start site region 34932			790 bp downstream