rs218787584 SNP Detail

Summary

• ID
  rs218787584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149223601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCCAGT CATTGACACA
  GAAAAATAAC TTGGGGCTGG AGAGATGACT CAGAGGTCAA CCATCTGTAA TGAGATCTGA
  CACCCTCTTC TGGAGTGTCT GAAGACAGCT ACAGTGTACT TACGTATATA ATAAATAAAT
  CTTTAAAAAA GAAAGAAAGA GCCAGGTGGT GGTGGCGCAC TCCTTTAATC CCAGCACTTG
  R
  GAGGCAGGCA GATTTCTGAG TTCGAGGCCG GCCTGGTCTA CACAGTGAGT TCCAGGACAG
  CCAGGGCTAC ACAGAAAAAC CCTGTCTCAA AAATTCAAAA AAAAAAAAAA AAAAAAAAAA
  GAAAGAGAGA AAGAGAGAAA GAAAAAAAAT AACTCAAAGC AGGGTCATGC TGATCATCTA
  AACTGTTACA TTCTGTGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321425016	CHEV_4_148513253	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218787584					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149223601 () rs orientation: forward

Symbol	Name	Function Class
Cenps	centromere protein S	1544 bp upstream
Rr398863	regulatory region 398863	1339 bp downstream
Rr604839	regulatory region 604839	1586 bp distal
Rr604840	regulatory region 604840	1101 bp distal
Rr604841	regulatory region 604841	1488 bp distal
Tssr44623	transcription start site region 44623	1549 bp upstream
Tssr44624	transcription start site region 44624	1519 bp upstream