rs218701464 SNP Detail

Summary

• ID
  rs218701464
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:94259708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGTTAT AACCCAGCCC
  CACCTGGAGG GGTTGCAGGA TGAAGGCAAA TTCTGTGATG GAAGAATTCC AATCAACCAT
  AAATAGACCC TCTCCTTCCA CGACCCACTC TCCAGTTCAG GGAAACAGGC AGTGGCAAGC
  CACCAGCTCC GTGAGCTCAT CCATCCCGTA AGGGGCTGGG GGAAGCGTCC ACCTTAGCCT
  S
  CCTCAGTTCC CCATCTGCCT TAAGGTGAAG GCGAGGCTGC GCAGCACTAG GTGGCTACGA
  CCTAGAAGTT GGCAAACCAG ACCTGGGAAG CATCTCCCCG CTTCCCGGCG CAACCCCGGC
  CCCAGCCCGC CACGCAGGTG GGCGCACAGC CCACAACCTC ACAACTTTGA GTGCATCTGG
  TCCGGGCCTC AACTTTGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369251507	MGP_WTSI_6_94232721	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218701464					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369251507	MGP_WTSI_6_94232721	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94259708 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17759	CpG island 17759			within coordinates
Gm31661	predicted gene, 31661			1284 bp upstream
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr634854	regulatory region 634854			259 bp distal
Rr634855	regulatory region 634855			251 bp proximal
Rr634856	regulatory region 634856			585 bp proximal
Rr634857	regulatory region 634857			1180 bp proximal
Rr634858	regulatory region 634858			1350 bp proximal
Rr634859	regulatory region 634859			1851 bp proximal
Tssr62172	transcription start site region 62172			788 bp downstream
Tssr62173	transcription start site region 62173			848 bp downstream
Tssr62174	transcription start site region 62174			1014 bp downstream
Tssr62175	transcription start site region 62175			1073 bp downstream
Tssr62176	transcription start site region 62176			1108 bp downstream
Tssr62177	transcription start site region 62177			1121 bp downstream