rs218701121 SNP Detail

Summary

• ID
  rs218701121
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52892419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGACGCTCC CAGTCATCCT
  TCAAAGCAGT GAGTTCTGCT AGGAAGTCAG TGAGCTGAGT TCAAGATTAG CATGGTATTT
  AGTGTGAGCT CAGGACTCCA ACAACCCATC TTTATCCTAC TTCCTGGGGT CTCCTGAGCA
  CTGTCCAGGC TATAGTTGCT TTTCTGCAGA TAAGTTTCCA GAAGTTATTC TATCATGTTT
  S
  CTTTCCTTTA CTTAATTAAG AACTTGTTTA GTTTTGTTTA TACAGGTTAT TTGTTTATAC
  AGATAATGAA TATAGTTGCT AGCTCCAAGA AAAACACACC CCACTTCCTT CAAACCAAAA
  TAAAGAAAAT AACCCCCACA AAACAAAAAC CAATTATTTC ACTAAGCCCA TGCTTTTACT
  TTTAATAAAT ATAAAAAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766348	CHEV_3_52788920	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218701121					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52892419 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	535 bp upstream
Rr576615	regulatory region 576615	687 bp distal
Rr576616	regulatory region 576616	433 bp proximal