rs218689107 SNP Detail

Summary

• ID
  rs218689107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76352862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCAACACTG TGTCAGGAAA GCCAAGAGTA
  TAGTCCATTC TTTGATCCTG CCTACCCCTT CTGCAGCACA GGAAAGAAGA ACAAAGAAAG
  AGCTGGGCCA TGTATGACTT GCTGGATCTC TATAATGGAA AGTTCTACAG TCCTTCCTAC
  R
  ACATTAAGTT TAAGTTATAT ATCACGCCCT GGAACATCAT AAGCAATGCC TGCATTATGA
  TGGGGATGAG GGGATGGGCT ATTAAATCTT GCTGGGGTGA AAATGTGTGG CCGGTTTATA
  TAGCGCATAA TATTCTTGTA ACCATAAAGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170919	CHEV_4_76080529	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218689107					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76352862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594098	regulatory region 594098			1142 bp proximal
Tssr42160	transcription start site region 42160			1167 bp downstream
Tssr42161	transcription start site region 42161			1238 bp downstream