rs218592513 SNP Detail

Summary

• ID
  rs218592513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144149091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTCCAAA CTCACACATG
  GCATGCATAG GCAGACATCC ACACATATAC CTTATGTGCG CTAAATAAAT GTTGAGCGGG
  AACATACTGG GGGGTGGGGG GAGAGGCACA AGGTGGTGTC AAGAGGACAC TTGGCATCAT
  TGGCCTACCC CTTCCTATCA CATGTGTACG ATCACACATG CACACACACA CACACACAGA
  Y
  GACTAGCTGT GTCATTTTTT TTTTCATTTT GTTTTTTAAA TGAAACATTG CAGGCAGTGG
  TATTCTGTAA TCCCAGTTAG AGTGTGAGAG CCACCTGGGC TACCGGGTAC AGGGAGAGTC
  CATCAGAAGG GGCCAAGTTC AGAAGCCCAT GTCTGCTATC CCAGCACTTG AGGGAGGTGG
  AGGCAGAAAG ATGGGGAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355979160	MGP_WTSI_2_144132907	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	C	C	C	T	T	C	T	T	C	T	C	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218592513					SNP	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	C	C	C	T	T	C	T	T	C	T	C	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355979160	MGP_WTSI_2_144132907	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144149091 () rs orientation: forward

Symbol	Name	Function Class
Ovol2	ovo like zinc finger 2	Intron
Rr566440	regulatory region 566440	1073 bp distal
Rr566441	regulatory region 566441	1067 bp proximal