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rs218590675 SNP Detail
Summary
  • ID
    rs218590675
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr4:135749138 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      GGGCCGCAA CTCCGCCCTC CGTGAGGGCC
    CGGCGGAGAC GGAAGCGCGA ATGGTCCCTT CCGGGCCTCC GCTGGGGGTG TGTGTATGTG
    TGGAAGGCCT CAGGACCCGC CCCCGCGCCA GACCACGCCC ACTATATCAC GGCGATCTGT
    S
    GAATACAGCA CAGGTCACGC CCCCGACACG CCCAACCCAG AGCCACGCAA CCAGCCACGC
    CCCCAAGCCT GTATTCTGCA AGCCAAACTC TGGCTTTAAC TCTCACGCAC CGCCTTTCCA
    GTCATACGCT CGTTTTCGCC TAAGGGTGGG                                 
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321353738 CHEV_4_135577742 CHEVERUD SCREENING_POP f SNP C G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs218590675 SNP C G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:135749138 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi15090 CpG island 15090 within coordinates
Eloa elongin A 178 bp upstream
Gm68304 predicted gene, 68304 174 bp upstream
Rr398604 regulatory region 398604 within coordinates
Rr602239 regulatory region 602239 75 bp distal
Rr602240 regulatory region 602240 within coordinates
Rr602241 regulatory region 602241 185 bp proximal
Tssr44023 transcription start site region 44023 162 bp upstream
Tssr44024 transcription start site region 44024 133 bp upstream
Tssr44025 transcription start site region 44025 91 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory