rs218590675 SNP Detail

Summary

• ID
  rs218590675
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135749138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGCCGCAA CTCCGCCCTC CGTGAGGGCC
  CGGCGGAGAC GGAAGCGCGA ATGGTCCCTT CCGGGCCTCC GCTGGGGGTG TGTGTATGTG
  TGGAAGGCCT CAGGACCCGC CCCCGCGCCA GACCACGCCC ACTATATCAC GGCGATCTGT
  S
  GAATACAGCA CAGGTCACGC CCCCGACACG CCCAACCCAG AGCCACGCAA CCAGCCACGC
  CCCCAAGCCT GTATTCTGCA AGCCAAACTC TGGCTTTAAC TCTCACGCAC CGCCTTTCCA
  GTCATACGCT CGTTTTCGCC TAAGGGTGGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353738	CHEV_4_135577742	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218590675					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135749138 () rs orientation: forward

Symbol	Name	Function Class
Eloa	elongin A	178 bp upstream
Gm68304	predicted gene, 68304	174 bp upstream
Rr398604	regulatory region 398604	within coordinates
Rr602239	regulatory region 602239	75 bp distal
Rr602240	regulatory region 602240	within coordinates
Rr602241	regulatory region 602241	185 bp proximal
Tssr44023	transcription start site region 44023	162 bp upstream
Tssr44024	transcription start site region 44024	133 bp upstream
Tssr44025	transcription start site region 44025	91 bp upstream