rs218545219 SNP Detail

Summary

• ID
  rs218545219
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152409581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATATAT AACTTTCTAG
  GAACACAAGG GGTCATGTCA ATGAGCTGTA CACCTAGGGA AGAAGATCCT CAATACGCAC
  ACGAGGCTGA TGAGCATCAT TAAGGCGCCA AACGCTGCTG AACCGGACCC TGCACTCACC
  AGATCTGGGT GGTCCATAAA GCTGGCTGAG GCTTTTTGGA ACTGGGGAGC TAGCAGGCTC
  A
  AGCTTGAACT TAAGGTCTCA AGCTGGAGCG TGCTCCTGGG GGCAGAAGGA AGGCTAGTCA
  CATGGTTGGC AAGATCTTCC ATGCTGGGCG TTTTCCATAG GATGAAGAAA TATGGTATTA
  TAACTCACTA TAACTCACCA CCACCACCAC CACCTTTTTT TTTTTTTTTT TTTTTTTTTT
  TTTGGAGGGG GATAGCAATG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434193	CHEV_4_151699233	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218545219					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152409581 () rs orientation: forward

Symbol	Name	Function Class
9430083M05Rik	RIKEN cDNA 9430083M05 gene	399 bp upstream
Cpgi15411	CpG island 15411	429 bp proximal
Rpl22	ribosomal protein L22	Intron
Rr398901	regulatory region 398901	421 bp upstream
Rr605841	regulatory region 605841	239 bp proximal
Rr605842	regulatory region 605842	756 bp proximal
Rr605843	regulatory region 605843	1160 bp proximal
Tssr40547	transcription start site region 40547	707 bp upstream