rs218412121 SNP Detail

Summary

• ID
  rs218412121
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138463139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG AGCCAAGAGC ACATTTATAT
  C
  TGGGGACAGC CATAAAAGGA CAAAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321376626	CHEV_4_138291743	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218412121					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138463139 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57720	predicted gene, 57720			within coordinates
Pla2g2c	phospholipase A2, group IIC			Intron
Rr603004	regulatory region 603004			69 bp proximal
Rr603005	regulatory region 603005			143 bp proximal
Rr603006	regulatory region 603006			1172 bp proximal
Rr603007	regulatory region 603007			1329 bp proximal
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant