rs218388458 SNP Detail

Summary

• ID
  rs218388458
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130550045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACTTCTG CAGACTCAGG
  CTGCTTGTCG GAGCCTCTTG GTTTCTTCTG GATAGAACTG ACTGCCTTTG CTGATTTGTG
  AGTAGCGTTT ACGAGTGGAT GGAGTTACCA CTGCTGATCC ATGTGAACTG AACCGCTGAT
  ATCCTGACCG TGAAGATTGA AATCACCCCC AAAGAAGTAT TTCTAAACAG GCCCATATCC
  W
  CCTTAGCCGT AGTAACCCTC CCTTCTACTT CCTTTGGTGG GTGATGAGCT AGAAGGGAGG
  TTAAAGCAGT TAAGAACACT TATTAAAGTA AGGTTTGAAA AATCTAAGCC TATGCCACCA
  TGCCCAGCTA ATGGAGACTC TTTAATTTAT AGTACTTATA TGACTACCCT GTGAAAAAAA
  GAAAGAAAGA GAAAAAAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ
ss359722446	MGP_WTSI_3_130459314	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	T	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ
rs218388458					SNP	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	T	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359722446	MGP_WTSI_3_130459314	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130550045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13827	CpG island 13827	1349 bp distal
Gm42997	predicted gene 42997	within coordinates
Gm43524	predicted gene 43524	1065 bp upstream
Rr585206	regulatory region 585206	1012 bp proximal