rs218388304 SNP Detail

Summary

• ID
  rs218388304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148545218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGCTAC TGGTATGCAG
  GGGGCAAGCA AGAGCTAGTG GTATACAGGG GGCAAGCAAG AGCTAGTGGT ATACAGGGGG
  CAAGCAAGAG CTAGTGGTAT ACAGGGGGCA AGCAAGAGCT AGTGGTATTC AGGGAAGGCC
  AGCCTGACCT GCAGTATGTG CTGGTTCCCG GGCCAGGGGA GGCTGGGGAG GGCTAGGTGC
  Y
  GTGGATGGTG AGGGGCGAAG CAGGCTGGGC TGACAAGTGC AGTGTGCTGG CTGAGGACCA
  AATGGGCACA GAGACCTGCT GAGCCAGAGA GAAGGGGGAG TGAAGATCGC CCATAAGTTC
  CGAAATTTCC CTCCTGCCTG CCTGGCACCA GCAGCTCTCT CTTTCTCGGG GACCAGACAT
  GCCTCTGGGC AGCAGGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
ss363617116	MGP_WTSI_4_147834870	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
rs218388304					SNP	T	T	T	T	T	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363617116	MGP_WTSI_4_147834870	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148545218 () rs orientation: forward

Symbol	Name	Function Class
Mtor	mechanistic target of rapamycin kinase	Intron
Rr604688	regulatory region 604688	within coordinates
Rr604689	regulatory region 604689	1201 bp proximal
Tssr44608	transcription start site region 44608	1878 bp upstream