TAATCCCTGG TATTTGAAAA TTGGTGAACT TTGTCCGTCT GGGTTTGTTT GTTTGTTTGT CTGTTTGTTT TAATAGAGAA TTCTCCCCCC CCCCACCCCC M AATAACGAGG GAGGTTGTCA TCAGGGCTCC TCTTTCCTCA AAGAAGAGGA CAAGATCTTA AGTTGTGACT TCATTTCTCC GGTGAACTAG TAAAGGCTG M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
B10.RIII-H2 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CE/J |
CZECHII/EiJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NON/ShiLtJ |
NZB/BlNJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss358277065 | MGP_WTSI_3_67318130 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | A | C | C | C | C | C | C | C | C | C | C | C | C | C | C | A | C | C | C | C |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
B10.RIII-H2 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CE/J |
CZECHII/EiJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NON/ShiLtJ |
NZB/BlNJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
||||
rs218329826 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | A | C | C | C | C | C | C | C | C | C | C | C | C | C | C | A | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss358277065 | MGP_WTSI_3_67318130 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/C |
Location: Chr3:67421541 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13247 | CpG island 13247 | 493 bp proximal | ||||||
Gm40067 | predicted gene, 40067 | 1041 bp upstream | ||||||
Rarres1 | retinoic acid receptor responder (tazarotene induced) 1 | Intron | ||||||
Rr577934 | regulatory region 577934 | 959 bp distal | ||||||
Rr577935 | regulatory region 577935 | 1184 bp distal | ||||||
Rr577936 | regulatory region 577936 | 1305 bp proximal | ||||||
Rr577937 | regulatory region 577937 | 1344 bp proximal | ||||||
Rr577938 | regulatory region 577938 | 1442 bp proximal | ||||||
Tssr33502 | transcription start site region 33502 | 1260 bp downstream | ||||||
Tssr33503 | transcription start site region 33503 | 1279 bp downstream | ||||||
Tssr33504 | transcription start site region 33504 | 1418 bp downstream | ||||||
Tssr33505 | transcription start site region 33505 | 1455 bp downstream | ||||||
Tssr33506 | transcription start site region 33506 | 1496 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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