rs218323166 SNP Detail

Summary

• ID
  rs218323166
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44073841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCCAGGA AGGTGGGGAG
  CGGCCTGTGC TGCTAGCTCC TGATGAAGGT TGGTTTTGTT TTGTTTTTAA GATTTTATTT
  TAGCTTATTT TTATCATGTA TATGGGGTAG GGGGGTGGGG CAGAGGATGT GTACACATTA
  GAGTGCACAT GTCAAAGTCC AGAAGAGGGT AACAGATACC CTGGAGCTGA AGTTAGAGAT
  S
  GTGGTGAACC TCCTGACATG GGTGACATTT CCCACAGCTA GGTGCAAGAG AATGAGAAGC
  TAGACAGTAT TCTGAACAGC ACAGCTGCAC CTGTGTCTCA AACAACAACA AAAAGTCACA
  AGTGAAACTT TCAGATCTAC TTTTTTAGGT TGTTTTTTTT TTTTTTTTTT TGAGACAGGA
  TCTTACACTG TACCTAGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100047	CHEV_4_44086713	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218323166					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44073841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	774 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1074 bp distal
Rr591150	regulatory region 591150	577 bp distal
Rr591151	regulatory region 591151	844 bp distal
Rr591152	regulatory region 591152	within coordinates
Tssr41482	transcription start site region 41482	1284 bp upstream
Tssr41483	transcription start site region 41483	1148 bp upstream
Tssr41484	transcription start site region 41484	1110 bp upstream
Tssr41485	transcription start site region 41485	820 bp upstream