rs218275756 SNP Detail

Summary

• ID
  rs218275756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135899430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACTTGAGG GTCAAGACTC AGGTCCCGAC
  TCTGACTCTC TTTCAATGTT TGGCCCCACC CCCAAGGAAA AGAGGTCCGC TCCTCAGCGC
  TCTTCGCTGT ACTGTTGGTC CTTATGCTGG GTGTTCCAGA TGCACCTCCT GCCTCAGTTT
  Y
  GCCTACTGTT ACAAGAGGAC GCTGAAGTCA GCAGATGTCG CGGCCCCTTT AAGCCACTAA
  GCTCCTGTCG TAATCGCTGT TTCTTAGACT AAGCCTTTCC GGGGGTGGGT GGGTGGGAGG
  AGCCTATATA TATTGTAGCA GCCAATCGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321354362	CHEV_4_135728034	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218275756					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135899430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	within coordinates
E2f2	E2F transcription factor 2	275 bp upstream
Rr367754	regulatory region 367754	within coordinates
Rr602302	regulatory region 602302	within coordinates
Tssr39670	transcription start site region 39670	147 bp upstream
Tssr39671	transcription start site region 39671	248 bp upstream
Tssr39672	transcription start site region 39672	277 bp upstream
Tssr39673	transcription start site region 39673	309 bp upstream
Tssr39674	transcription start site region 39674	439 bp upstream
Tssr39675	transcription start site region 39675	547 bp upstream
Tssr39676	transcription start site region 39676	731 bp upstream
Tssr39677	transcription start site region 39677	826 bp upstream
Tssr39678	transcription start site region 39678	1048 bp upstream
Tssr44029	transcription start site region 44029	199 bp downstream
Tssr44030	transcription start site region 44030	482 bp downstream
Tssr44031	transcription start site region 44031	919 bp downstream