rs218248477 SNP Detail

Summary

• ID
  rs218248477
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41359426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTGTAA ATGAATAAGG
  CAGAAAGCAA TAAATCAGGA TACCCAATGA CCTCTATGAA CAAACACAGG GGCACAAGCA
  CCTGCACACA CACACACACA CACACACACA CACACACACA CACACACACA CAGGCATTTA
  ACTTCAATAA ATGGAACTAA ACCAGAGCAC AAATGGAAAC CTTTAAGGAA GAATAAAGTA
  T
  AGCATTGGAA ATGTAAATGA GCTAAATACC TAATAAAAAA TGGAAAAAAA AAAAAGAATA
  AAGTACAACA ACCAAACCTA CAGGAAAGCC ATGGATGGGT CCCTGGGAAG TCTAGGCTCT
  CTACCGGGTC TGTGGGAATG CTAGAGGTAA TATGAACAGG AAGAAATCAA CAGAGATTCA
  CAAAACCTGG CATAAAACAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	PWK/PhJ	WSB/EiJ	ZALENDE/EiJ
ss402481927	MGP_WTSI_19_41445477	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	PWK/PhJ	WSB/EiJ	ZALENDE/EiJ
rs218248477					SNP	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402481927	MGP_WTSI_19_41445477	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41359426 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr547619	regulatory region 547619	489 bp distal
Rr547620	regulatory region 547620	462 bp proximal
Rr547621	regulatory region 547621	1253 bp proximal
Tssr159304	transcription start site region 159304	755 bp upstream
Tssr159305	transcription start site region 159305	728 bp upstream
Tssr159306	transcription start site region 159306	920 bp downstream