rs218224872 SNP Detail

Summary

• ID
  rs218224872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119459219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTTGAG ATGCAGATTT
  GAGTCTTGAA GAGGAGTATT ATATATGCAA ATTATGCCCC ACCCCAACCC TCTTGCAAGT
  CTTCCCACCG AGAGGTTAGC TAGTGAGGCT GTTAGCTAGT GAGGCTTCCC GTCCTGTCGG
  GGAGTGAGCC GTGTCAGCAG AGAGCCTGAG GCTATGTGAA TGAAGGGAGG AGGCTGAACT
  Y
  CATGTCCTGT CTGAGTTCTG TTCTCGAAAC GGGAGCTTGT GGGTTTGAAA ACTTTTGTTT
  CTAAATGGAG GAATAGATGA CTTTATTTTG GTGGGGGGTT GGGACTGTGG CTTTAAAACA
  AATCGCTTTT GAGTAGGATG TATATTTTTG TTGGATATTT TGTTTGTTTA TTTTTTTAGA
  GTCCTCCACA GCAACATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369847850	MGP_WTSI_6_119432276	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218224872					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369847850	MGP_WTSI_6_119432276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119459219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	959 bp distal
Fbxl14	F-box and leucine-rich repeat protein 14	mRNA-UTR
Rr637692	regulatory region 637692	1844 bp distal
Rr637693	regulatory region 637693	within coordinates
Rr637694	regulatory region 637694	621 bp proximal
Rr637695	regulatory region 637695	908 bp proximal
Tssr58506	transcription start site region 58506	864 bp downstream
Tssr58507	transcription start site region 58507	770 bp downstream
Tssr58508	transcription start site region 58508	717 bp downstream
Tssr58509	transcription start site region 58509	695 bp downstream
Tssr58510	transcription start site region 58510	307 bp downstream
Tssr62722	transcription start site region 62722	1764 bp upstream
Tssr62723	transcription start site region 62723	678 bp upstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron