rs218141523 SNP Detail

Summary

• ID
  rs218141523
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134342629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCACCG CAGTTACCAG
  GCACCGACGC CCCGCCCCCA CGGTGCCCGC CGGCCAATCG CACGCAGCCT GCTGCCCTAA
  GCTCCGCAAG CCCTGGACAC ACGGACACAC ACACACACAC ACGCTCTCAT AGCGAACCCG
  ACACACACAC ACACACATAC AAACATATAC ACACACACAC AAACGCTCAC ACAGCGAACC
  S
  GAGCGCGACC CCACGGGGCT CAGGAGGGGC CGTGGCACCC CGCGCGCCCG CGCGCGCGTC
  CCCGAGCGAG CCCTCCCAGC CAATCAGGAG CGAAGGAGCA GGGCTGCGCG GCCCCGCCGG
  GGTACGCTAA CTCGTCCGCT CGTTCACGCG CGGGGGGCTG CTCGCGCGAG ACCATCCCTC
  TCAAACACCC CCAACCCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366807831	MGP_WTSI_5_134789645	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218141523					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366807831	MGP_WTSI_5_134789645	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134342629 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			within coordinates
Gm71534	predicted gene, 71534			1027 bp upstream
Gm71761	predicted gene, 71761			within coordinates
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr378666	regulatory region 378666			994 bp upstream
Rr399401	regulatory region 399401			8 bp downstream
Rr621987	regulatory region 621987			1408 bp distal
Rr621988	regulatory region 621988			11 bp distal
Rr621989	regulatory region 621989			within coordinates
Rr621990	regulatory region 621990			897 bp proximal
Rr621991	regulatory region 621991			1038 bp proximal
Rr621992	regulatory region 621992			1948 bp proximal
Tssr1657	transcription start site region 1657			1181 bp downstream
Tssr49086	transcription start site region 49086			111 bp downstream
Tssr49087	transcription start site region 49087			79 bp downstream
Tssr49088	transcription start site region 49088			204 bp upstream
Tssr49089	transcription start site region 49089			1171 bp upstream
Tssr53628	transcription start site region 53628			1226 bp upstream
Tssr53629	transcription start site region 53629			556 bp upstream
Tssr53630	transcription start site region 53630			12 bp downstream
Tssr53631	transcription start site region 53631			631 bp downstream
Tssr53632	transcription start site region 53632			668 bp downstream
Tssr53633	transcription start site region 53633			681 bp downstream
Tssr53634	transcription start site region 53634			710 bp downstream
Tssr53635	transcription start site region 53635			739 bp downstream
Tssr53636	transcription start site region 53636			783 bp downstream
Tssr53637	transcription start site region 53637			862 bp downstream
Tssr53638	transcription start site region 53638			903 bp downstream