rs218122911 SNP Detail

Summary

• ID
  rs218122911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116530755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGGCTC ACTGTGAGAT
  CTTAGGAACC CAACTAGCTC CTTCATTAAC CCTTTGGGAC CTGAGCATTG GGCAGCCATT
  ATTACTTGAA TGGCCAATTA GTAGGTAATT AGTGCTCTGG AACTCTGTGG TCAGGTCCTG
  CTTAGAAACC CTCTTGAGAA TGAAACAGTA AATTCAAGAC ATGGGGGTGG CTTGTGGTGG
  Y
  ACAACGTGAA ACCCAGCCCT AGGTAGGCTC AGGCAGGACG AACATGAGTT TGACTGAAGC
  CTGGGCTATG TAGTAAGCCT CTATCTAAAG GAAGGACCAA AAGGAGAGAG GGAAAATCTA
  GCCTGTAACT CCTATTTATC AAAAACATTC TTCATTGAAA TCCTCACACT GGGCCCTGGG
  GATGTATGTC AGTAGTAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277714	CHEV_4_116346163	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218122911					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116530755 () rs orientation: forward

Symbol	Name	Function Class
Gm25137	predicted gene, 25137	595 bp upstream
Rr597955	regulatory region 597955	1971 bp distal
Rr597956	regulatory region 597956	257 bp distal
Tssr38541	transcription start site region 38541	1428 bp upstream