rs218116242 SNP Detail

Summary

• ID
  rs218116242
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68950863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTGTGT GCATGACTTA
  AGACGTCCAC ACATGCTTAT AAAATGTCTG TTAGATAAAA GTGAAAATCT TTTAGCCAGG
  CAGTGATGGC TTTGGCTCCA GCACTTGGGA GGCAGAGGAA TCTCTGAGTT AAAGACCATC
  CTGGTCAACA GAGCAATTAT CCAGGACAGC CAGGGCTACA CAGAGAAACC ATGGTTTTTT
  G
  TTTTTTGGTT TTTTTTTTTT TTTTGGGGGG GGGGGGAGAA TCAAACAAAA AACTGAATAC
  CTTTTAGATT AGGTCATTTC TCACTTTATG CTTCCTCCAT AAGATGGTTA AAATTTTATA
  CACTTCCAAT ATACATCTTT TTTTCAAGAG ATTTTTCAAT CTTTCATCAT AGCCCAGGAA
  TCACACACTC TAATATCCTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss358313982	MGP_WTSI_3_68847452	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs218116242					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313982	MGP_WTSI_3_68847452	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68950863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	531 bp proximal
Gm65005	predicted gene, 65005	1320 bp upstream
Rr578116	regulatory region 578116	1892 bp distal
Rr578117	regulatory region 578117	993 bp distal
Rr578118	regulatory region 578118	362 bp proximal
Rr578119	regulatory region 578119	1215 bp proximal
Rr578120	regulatory region 578120	1352 bp proximal
Rr578121	regulatory region 578121	1603 bp proximal
Rr578122	regulatory region 578122	1813 bp proximal
Trim59	tripartite motif-containing 59	Intron
Tssr29529	transcription start site region 29529	1546 bp upstream
Tssr29530	transcription start site region 29530	1588 bp upstream
Tssr33523	transcription start site region 33523	1120 bp downstream
Tssr33524	transcription start site region 33524	1130 bp downstream
Tssr33525	transcription start site region 33525	1167 bp downstream
Tssr33526	transcription start site region 33526	1433 bp downstream
Tssr33527	transcription start site region 33527	1455 bp downstream