rs218087545 SNP Detail

Summary

• ID
  rs218087545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53338504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAATAAAAA GAAAGAAAAG AAAAAGTCGC TTCCCATATC
  TCAGTGCAAC TTCAGGCCTC ACATACTTTG TCCTTGATCC CGGGAGGAAT CTTGTTAAGT
  R
  TTCTTCAAAG TGCAAAAAGA ACTAATTGCA TGTCCCTCTT TCTCCCTGAT CATTAAATAA
  AGACACTAGG AAGCCAAACA CAGTTTACTT CACCTGGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321117462	CHEV_4_53351376	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218087545					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53338504 () rs orientation: forward

Symbol	Name	Function Class
Rr376485	regulatory region 376485	within coordinates
Rr592236	regulatory region 592236	313 bp distal
Rr592237	regulatory region 592237	711 bp proximal
Rr592238	regulatory region 592238	1205 bp proximal
Tssr37294	transcription start site region 37294	1613 bp upstream
Tssr41768	transcription start site region 41768	1313 bp downstream