rs218081428 SNP Detail

Summary

• ID
  rs218081428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129185360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTACACA TACAGACTGA
  TTCTGAACTC TCTCTGCTGG TGAGAATGAC CCGGAACCTC TGATTCTCCT GCCTCTACCT
  CCTGAGTGTT GAGGTTACAG GAATAGGCGC GTACTATCTA CCACAGCAGG TTTTATGTGG
  TGCTAGGGAT CAAGGCCAAG ACCTCCGACA TGTTCCATGA GCACTCTACC CACTGAGCTG
  Y
  GGCCTCAGCT ATTACCTGTG TGTGTTTGTG TGTTTGCACA ATGTGTGCGC GTGTGTAGAG
  GCCAGAGGTC AATTTTGTAT GTCCTCAACG GTTTTTCATA GGATCCCTCG CTGGGTCTGG
  AGTTCACCAG TTAAGCTACA GGTTCTCCTG CCACTGCCAT TCAGTGCCAG GCTTACAGGT
  GTTACCCCAG GGCTGTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321311651	CHEV_4_128968811	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218081428					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129185360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	1836 bp proximal
Sync	syncoilin	Intron