rs218031257 SNP Detail

Summary

• ID
  rs218031257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141302496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATACCTC TTTATATCCG
  TTCCAGACGG GGTCTCAAAG TACCTCAGGC CAACCTGGTA CTTACTATGT CCTCAAAGAT
  AACTTTAAAC TTTGGCTCCT CCTGCCTCCA CTTCCTTCCG GTACTTCTGG CATGCACAGG
  CCTGCTCAGC CATCACCTGG TCCCCTCTGA AGGTCTTTCT GGTTGAATAG GCAGCAACAG
  R
  CTCTACATGC TAGTGAGGTC ATACTCCAAG CACCTGGGTG TGGCCTCAGG CGAGAGGGAC
  CCTGGCACAG GGCCATGGGC AAGTTCAGCG CTCCCCAGCA ACTCCTGATG GTCCTTTGTT
  CAGAGTCCAA GTTCCCAGGT CTCATTCTTG AATTTCCGGG CATCCCCTCC AAACAGGTGA
  CAGTTTGGGC CAGCGACTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363523960	MGP_WTSI_4_141131100	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218031257					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363523960	MGP_WTSI_4_141131100	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141302496 () rs orientation: forward

Symbol	Name	Function Class
Fblim1	filamin binding LIM protein 1	877 bp downstream
Gm68503	predicted gene, 68503	11 bp upstream
Rr377309	regulatory region 377309	1208 bp downstream
Rr603811	regulatory region 603811	1004 bp distal
Rr603812	regulatory region 603812	22 bp distal
Rr603813	regulatory region 603813	within coordinates
Rr603814	regulatory region 603814	387 bp proximal
Rr603815	regulatory region 603815	1874 bp proximal
Tssr40085	transcription start site region 40085	1897 bp downstream
Tssr40086	transcription start site region 40086	1659 bp downstream
Tssr44332	transcription start site region 44332	1620 bp downstream