rs218027638 SNP Detail

Summary

• ID
  rs218027638
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53101974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTCCCGC CTAGAGTTAA
  GAGCAGAATT ATTGTAATTT TTGTAATCAT CATTTTCTTG ACCTCTGTCT AGTTTAAGAA
  AGGAGATTTA AGTTGCTATA TCTGTCTGTG CCTTCAGTTT ATTGCAAAAA GTTGCTTTGA
  GTACACACAT GACAGAAATA CGAGCTTATG CATATCTGCA GTTGCCCCCT CCCCCAAAAA
  T
  CAGTAATTTA AATAACATTT TCAAATGGTT AAACTCTTTT ATGATGCCAT CAGACAATTT
  GACAAGTGGT TGTCTCTTAA AGTTTGATTG ATGTTGAGCC CAGGAACGGC TGTTTTTCTC
  TAGCTGTGGT GACACACGGG GCAGGCGTCA AATCTACTCG GGCTCATCAT CAGGAGGAGC
  CTTTACCCAC CTGTGGTTTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766878	CHEV_3_52998475	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs218027638					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53101974 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576654	regulatory region 576654			1062 bp proximal