rs218004330 SNP Detail

Summary

• ID
  rs218004330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113579659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACACAGG GAACAAAAGC
  AGAAAGGCTG GGCTGGGCTG GGCTGGGTTC AGGCTTTTGG AACCTCTGGT TCTGGAAAAC
  CAACTCCAGG AGCTGACATT CTGTTCTCAA GGTGCTACCC CCAAAGAGAT GCATAAGTTA
  AAAATGTAAA AATTTTATAC CTTGGTACTG AGTGGTTGTG GGGCATGCCT TTAATCTCAG
  Y
  ACTCTAGAAG CAGAGGCAGG TAGATCTCTG AGTTGGAGGC CAGCCTGACC TACAAAGATA
  AAGTGCCACG GTGTTTTAGG TTTCCGTTGC TGTGAAGAGG CACCATGACC AAGGCAACTC
  TTACAAAGGC AAACATTTAA TCAGGGCTGT CTTACGATTT CAAAGGTTCA GCCCATTATC
  ATCACGGTGG TAAAGCACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369716068	MGP_WTSI_6_113552692	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218004330					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369716068	MGP_WTSI_6_113552692	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113579659 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17850	CpG island 17850	1677 bp proximal
Fancd2os	Fancd2 opposite strand	1983 bp upstream
Gm67049	predicted gene, 67049	within coordinates
Gm67050	predicted gene, 67050	1718 bp downstream
Rr379958	regulatory region 379958	1319 bp downstream
Rr636546	regulatory region 636546	1994 bp distal
Rr636547	regulatory region 636547	1972 bp distal
Rr636548	regulatory region 636548	1618 bp distal
Rr636549	regulatory region 636549	1584 bp proximal
Rr636550	regulatory region 636550	1808 bp proximal
Tssr58229	transcription start site region 58229	1934 bp downstream