rs217990088 SNP Detail

Summary

• ID
  rs217990088
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138453019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC CAGTCTTGTG ATCACCACCT
  C
  TATCTCCTAT TTCCTCCTTA AGGGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321376523	CHEV_4_138281623	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217990088					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138453019 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2c	phospholipase A2, group IIC	Intron
Rr602997	regulatory region 602997	1934 bp distal
Rr602998	regulatory region 602998	1364 bp distal
Rr602999	regulatory region 602999	906 bp distal
Rr603000	regulatory region 603000	373 bp distal
Rr603001	regulatory region 603001	121 bp distal
Rr603002	regulatory region 603002	8 bp proximal
Tssr39875	transcription start site region 39875	399 bp downstream
Tssr44173	transcription start site region 44173	450 bp upstream
Tssr44174	transcription start site region 44174	441 bp upstream
Ubxn10	UBX domain protein 10	Intron