rs217978736 SNP Detail

Summary

• ID
  rs217978736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114872410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATGTTTCC AGAAGTGCAT AACGCACAGC
  TTGGGTGGAC TGCCACCAAG AAACTCCCAT CACACCTGTC ACCGTACCAC AAAGGAAGCT
  CCCCCATGCA ACAGCAACAG GAAAGGCTGT CAAAGGCAGC GCTTGGCTTG Attattttga
  Y
  ttgtgtgagt gtgaatgtgt gtgtgaatac gagtgagtgt caagtgtgtg catttgcctg
  tggaggccag aaaaggtcat cagattccct ggagctggag tgacagatgg tcgtgagcca
  tctggcctgg gtgctgtgaa cagaactctg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914959	CHEV_6_114845467	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217978736					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114872410 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	1507 bp downstream
Rr636859	regulatory region 636859	379 bp distal
Rr636860	regulatory region 636860	460 bp distal
Rr636861	regulatory region 636861	363 bp distal
Rr636862	regulatory region 636862	931 bp proximal
Vgll4	vestigial like family member 4	Intron