rs217973534 SNP Detail

Summary

• ID
  rs217973534
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14294811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGGGGCA ATGGGCCTTC
  CTTTCACTCC TTTCCTCTTC CTCTTGCATT TCCTGATTGC TGAGTCATCT AAGGATAGCC
  ATTGCATCAG ACTGTGATTT CAGACTCGTG CCAACTCGGA AAAGAAACAA TCACCGCCTG
  AGTTAGAATG AAGATGAAAC GCACTCCCAG TCTCCCTGTG TATTCCCTCT TTCTGAGAAC
  W
  CCCTCTTGAT CAGGAGTAAA GTTCACCTTG TCCAGACACT TCAAATGAAG TGCTGGTCTC
  TTTCGTTGTG TCCCCAAACT TATTTCTGAC AACTTCAAGC TTCCAGTTAC CTCCAGCAAT
  GGAGGAAACA GCCAGTGCTT GGAATCCTTC TAGTTCCAGC TGGGTCTAGT CCTTTTTGAT
  AGGGAACAGA AAGGGACATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390192495	MGP_WTSI_14_9007476	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217973534					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390192495	MGP_WTSI_14_9007476	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14294811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6157	CpG island 6157	1524 bp proximal
Pdhb	pyruvate dehydrogenase (lipoamide) beta	1937 bp upstream
Rr389295	regulatory region 389295	within coordinates
Rr487854	regulatory region 487854	1228 bp distal
Rr487855	regulatory region 487855	34 bp proximal
Rr487856	regulatory region 487856	996 bp proximal
Rr487857	regulatory region 487857	1115 bp proximal
Rr487858	regulatory region 487858	1447 bp proximal
Tssr127398	transcription start site region 127398	1985 bp upstream
Tssr127399	transcription start site region 127399	1959 bp upstream