rs217955000 SNP Detail

Summary

• ID
  rs217955000
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152020271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCAATAT TTTTTTAATT
  AAGTTTTAAA AATACATAAG AAGGATGGGG AAATGTTTCA GCAGTTAAAT GTTCTCGCTC
  TCATCCAGAT GACCCAATCT GTTTCCCAAC TCTACAGTCA AGCGGCCCAC AGCTGCCTAA
  ACTTCAGCTC TAGACCTGAT GCCGCTCCTG CCCTACAAAC ACACGCACCC ACATACACAC
  G
  CACCCACATA CACACGCACC TACATACACA CACCTACATA CACACACCGA CATACACATG
  CACCCACATA CACACGCACC CACATACACA CGCACCCACA TGCACACACC CACATACACA
  CGCACCCACA TACACAAGCA CCCACATACA CACGCACCCA CATACACACA CACACACATA
  CACACGCACC CACATACACA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	CBA/J	DBA/1J	JF1/MsJ	LP/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss360264002	MGP_WTSI_3_151977598	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	CBA/J	DBA/1J	JF1/MsJ	LP/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs217955000					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360264002	MGP_WTSI_3_151977598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152020271 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			within coordinates
Rr587524	regulatory region 587524			959 bp proximal
Rr587525	regulatory region 587525			1177 bp proximal
Rr587526	regulatory region 587526			1221 bp proximal
Rr587527	regulatory region 587527			1640 bp proximal
Rr587528	regulatory region 587528			1932 bp proximal