rs217946435 SNP Detail

Summary

• ID
  rs217946435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137571912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATTGAAA GTAAGTTGGA
  ATATTGATCA TCAGATTTTT ATTTATTTTT TGCCTTTTAG GTACTTGAGT TGGCAGGAAA
  TGCGTCAAAA GACTTAAAGG TAAAGCGTAT CACCCCTCGT CACTTGCAGC TTGCTATACG
  TGGAGATGAA GAATTGGATT CTCTGATCAA AGCTACCATT GCTGGTGGTG GTATGTCATC
  Y
  CTAAACTCCT AACATTCTAT TTAAGAAGAA AATTCCTACA CTCCCATTGT TTCTAGAAGA
  GATTTCAGTA CAGGGTGCTT TCATGGGGTT TGGCTTTCCA CTTAGTTTTT GCTAAGATCA
  TTGTTCATCC CTCAAGTTTT CACTTTGTAT ATGAATTTTA CCTGCTTTGA GTTCATGTAT
  TGTTTTTTTA AATGTTTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359894909	MGP_WTSI_3_137529115	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217946435					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894909	MGP_WTSI_3_137529115	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137571912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13866	CpG island 13866	323 bp distal
Cpgi13867	CpG island 13867	1200 bp proximal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	889 bp upstream
Gm43403	predicted gene 43403	1825 bp upstream
H2az1	H2A.Z variant histone 1	Intron
Rr367565	regulatory region 367565	1644 bp downstream
Rr398061	regulatory region 398061	146 bp downstream
Rr585997	regulatory region 585997	1998 bp distal
Rr585998	regulatory region 585998	1654 bp distal
Rr585999	regulatory region 585999	1835 bp distal
Rr586000	regulatory region 586000	1528 bp distal
Rr586001	regulatory region 586001	1557 bp distal
Rr586002	regulatory region 586002	1417 bp distal
Rr586003	regulatory region 586003	916 bp distal
Rr586004	regulatory region 586004	379 bp distal
Rr586005	regulatory region 586005	85 bp proximal
Rr586006	regulatory region 586006	1034 bp proximal
Rr586007	regulatory region 586007	1604 bp proximal
Tssr31912	transcription start site region 31912	1626 bp downstream
Tssr31913	transcription start site region 31913	1587 bp downstream
Tssr31914	transcription start site region 31914	1560 bp downstream
Tssr31915	transcription start site region 31915	1030 bp downstream
Tssr31916	transcription start site region 31916	280 bp downstream
Tssr31917	transcription start site region 31917	213 bp downstream
Tssr31918	transcription start site region 31918	1607 bp upstream
Tssr31919	transcription start site region 31919	1656 bp upstream
Tssr31920	transcription start site region 31920	1708 bp upstream
Tssr31921	transcription start site region 31921	1727 bp upstream
Tssr31922	transcription start site region 31922	1807 bp upstream
Tssr31923	transcription start site region 31923	1911 bp upstream
Tssr31924	transcription start site region 31924	1926 bp upstream
Tssr31925	transcription start site region 31925	1970 bp upstream
Tssr35855	transcription start site region 35855	1820 bp upstream