rs217939408 SNP Detail

Summary

• ID
  rs217939408
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141448627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGAAAG TCAACACCGA
  ATTTACTTAG AGAAGAACTT AGAGCTAGCC TAATTGTTCA AATGGTACCC TTCAAACTCC
  AGACTAAAGA CTGAACCCTC CTTAACCATA CAATTATGAT TCAGCCTGCT ATCCCCTTTA
  GTTTACTTAA CATTTTCTGC AGACATCGGA GTGCAATGGG CTGGGCAGGG AGCGTGTAAG
  G
  CAGCGGTAGT GCTAGCTAGG ATGACGTGCA CACAGGATGG AGGAAGAGAA ACAGCAGAGA
  AACAGCTTCA CCCTCTGTAG ACCTCAAGTC CTACCAACAA ATTCAACTTA AAATTACTCC
  CCATCAGCTG GCAATTATAA CTTGGGTCAT CAAAACACCC TACACACACA CACACACACA
  CACACACACA AAAATTGAAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321389272	CHEV_4_141277231	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217939408					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141448627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15241	CpG island 15241	1416 bp proximal
Ddi2	DNA-damage inducible protein 2	Intron
Rr398662	regulatory region 398662	1729 bp downstream
Rr603862	regulatory region 603862	1201 bp distal
Rr603863	regulatory region 603863	within coordinates
Rr603864	regulatory region 603864	605 bp proximal
Tssr44360	transcription start site region 44360	1981 bp downstream