rs217911895 SNP Detail

Summary

• ID
  rs217911895
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:29213643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGGTGTC CTGGGGACAC
  TCTTCTCCCT CCCTGCCTTG AGAGCTGCTG TGTCTCCTTT TCTCCCCACC CCAGGAAGGC
  TGGGTTTGTT TACCTCTCGA CAGTGTGGTG ACAGCCAGGC CCAGGGGAGC CTTGGCTTCC
  AAGCCACCAG GCTCTCTGGG GTGCCCAACC TCCCCAATGG TACCCCCGGG ACCCTGCCAG
  S
  AAAACAGAGG CTGTTCCATG CATGTGCAAA GGGAAAGGCG AGTCTCCCAT GGAGCTCAGT
  ATTACAGAGG ATTTACAGAT GTCTTCTTGG CTCTTGGGAG GTGGGCACCA GTGGAGCCCA
  AAGGATAGGG CCTGGTGTAA GCCCCGAAGA CCCTGGAGCA TGGGAAAGGA GAGGAGAGTG
  TCCGAGTCCT TGGCAAAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367809266	MGP_WTSI_6_29163644	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217911895					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367809266	MGP_WTSI_6_29163644	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29213643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17225	CpG island 17225	966 bp distal
Cpgi17226	CpG island 17226	1790 bp proximal
D6Mit180	DNA segment, Chr 6, Massachusetts Institute of Technology 180	729 bp distal
Impdh1	inosine monophosphate dehydrogenase 1	Intron
Rr627515	regulatory region 627515	1406 bp distal
Rr627516	regulatory region 627516	1608 bp distal
Rr627517	regulatory region 627517	857 bp distal
Rr627518	regulatory region 627518	448 bp proximal
Rr627519	regulatory region 627519	1965 bp proximal
Tssr55214	transcription start site region 55214	1217 bp downstream
Tssr60074	transcription start site region 60074	1353 bp upstream
Tssr60075	transcription start site region 60075	1331 bp upstream
Tssr60076	transcription start site region 60076	1176 bp upstream