rs217890731 SNP Detail

Summary

• ID
  rs217890731
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30299859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGACAGGG CCAAGAGTAC AATAGGAATT
  GAAAACAAAT AGCAAATATA TACATAAATA TATTTCTCAT ATTATGGTAT AGGCCTTGCT
  AAGCTTCTCT TAAATGGCGA TGGAAAGAAA TTGCTAGAGC CTTTTGGCAT CTATTTACAG
  M
  ATCCAAGAAA ACAAAATAGA GACACTAACG TTCTGTGGGT AAGGCCTAGA GGGAAAGCAT
  GACCTGGTTA ATGTTTGGTA TATTTTGTTG TTGGTGAGCC TAGTCACCAG TCTATACTGG
  AAGGCCTGGT AGGACCAGAC TCCTTACATG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320693502	CHEV_3_30144632	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217890731					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30299859 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574744	regulatory region 574744			742 bp distal
Rr574745	regulatory region 574745			78 bp proximal
Rr574746	regulatory region 574746			1031 bp proximal