rs217827619 SNP Detail

Summary

• ID
  rs217827619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54477727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTTTGA AATTACACAT
  CTATTCTCTT TAGCCTTCCT CTTGCGATGA TGGACAGTAA CCAAAAGCAG TGTGGGGAGA
  AAAGAGTCCA TTTGACTTCC ATTTTCAGGT AACGGGTTGT CACTGACAGA AGTCAGGGTG
  GGAACTCAAG AAGAAGCAGT CAGGACCTTA GAGAAAGCAG TTTTTTTACT GGCTTTCTCC
  Y
  CGGCTTCTCT AAGCTTGCTT TCTTGTACAG CCCAGACCAC TTATCCAGGC AGGTGTAGCT
  ACTCCCACAG TGGGATGTAC CCTTTAATAT TAATTAGAAA TCTAGAAAAT GCCCTTTAGA
  CAAACCCATA GGCCAATCCG ATCCAGGTAA CCTCAGCTAA GGTTCCCTCT TCCGGGACGA
  GTTTGAGTCA CGTTGACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771953	CHEV_3_54374228	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217827619					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54477727 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	415 bp upstream
Rr576808	regulatory region 576808	1912 bp distal
Rr576809	regulatory region 576809	375 bp proximal
Tssr29130	transcription start site region 29130	389 bp downstream