rs217820442 SNP Detail

Summary

• ID
  rs217820442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132482713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagtgaagg aactgccacc aagtctgatg
  acctgagttt catccctagg acccatgagt cacgcacgag gtggaaggag agaactatct
  cctccaagca agttctcctc tgatctccgc acAgtgtgtg tgtaggcatg atatatatgt
  R
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtA TATATATATG ATCAAGACTT TTATTTTTTT
  CATTTTCAAA TAAGTTTTAA AGAGACAGTT TTCCAAGAAC CTAATGCCAA GTCTAGGGTC
  ACTGAAAGTG CTCAACAATT GTTAATTGCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336205	CHEV_4_132311317	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217820442					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132482713 () rs orientation: forward

Symbol	Name	Function Class
Rr601061	regulatory region 601061	847 bp distal
Rr601062	regulatory region 601062	648 bp distal
Rr601063	regulatory region 601063	1135 bp proximal
Rr601064	regulatory region 601064	1840 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	Intron
Tssr43702	transcription start site region 43702	1702 bp downstream
Tssr43703	transcription start site region 43703	1705 bp downstream
Tssr43704	transcription start site region 43704	1760 bp downstream
Tssr43705	transcription start site region 43705	1827 bp downstream
Tssr43706	transcription start site region 43706	1846 bp downstream