rs217817173 SNP Detail

Summary

• ID
  rs217817173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107345148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATACAGA AGGTGCTCAG
  AGAGCAATGG TTGTGTGAGT GTGGGGATGA GAGCAGACTC AGGAAAGAGG CCATTTGGGG
  AATTTTAGCT TATTGAAGTT ATGTAGACCC CACTTCTGAC CCCAGTCCAG CAAAAGTGGG
  GGTGTTTGAA AACCAGCTGT TGCTTGGTTA CAGGCTTTGT GCCTCTTCAG CCTGTGTGAG
  Y
  TCCTGGCCTG ACGCTAGCGA GCAGTACTGA GTTAGCAATA CTAGGTCATC AGTACTGGGT
  TGGTAGTACC AAGTCAGTGA TACTACATGC TGACCTATTA CCATGGCCAC AGTGAGGAGG
  GGTCTCAAAG TCTATCTGCT TCAACTCCCC CTGGCTCCTG GAAGCTTGGC TCTCCATATT
  CTGCTGGGAT GACCTCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321248451	CHEV_4_107160556	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217817173					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107345148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	1495 bp proximal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	1265 bp proximal