rs217781271 SNP Detail

Summary

• ID
  rs217781271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:65757750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTCTTTGT GATCATAAAA TCCAGCGAAT
  GCCCCTTTCA GTCCTTTGAA TGCTCTCCAG GGTACCATGT TTTGTAGAGA ATGAGAGTGA
  TGACCAGTTG TCTGAAATAA TCTCTGGCCC TTGCCTTGGA GGCTTCATCC CCCCACCACC
  Y
  CCCTTCTTCT AGTCTTGGCT ATTTCAGGAA ACTGAAAAAG ACAGCCTAGG GAGCTAATCC
  TGGGCTTCAC TTCTGGGAGG GCTGAAAAGG AGGTGGGGGA GGCAGATTTT CCTGTACAGA
  AGACCGTGTG TTCCTTTTGA AATGTCTTAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321148580	CHEV_4_65500547	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217781271					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:65757750 () rs orientation: forward

Symbol	Name	Function Class
Astn2	astrotactin 2	Intron
Rr593736	regulatory region 593736	within coordinates
Rr593737	regulatory region 593737	188 bp proximal