rs217777198 SNP Detail

Summary

• ID
  rs217777198
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51355969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGAATAA AGATATTTTA
  TTATTGAGAT TTTTTTTTGT TTCACTTATT TCAGGCATTA CCATCTTTAT GCCAAAACGA
  CAGACTCAGT TTTAATGTGT TTTAGGTTTT CATTGTCTTC TATCATAATT CTAAATATTT
  TACATATACT ATTATTTTGT TTGTTAGGGT TCTTATTGAC TTCATTAGCT TCATATAATC
  M
  TCATATCAAA TTCATACACA TATACACATA TATACATACT CATGAACAGA AAAACTCATC
  ACGTGTCAAT TACTAATTTG TGAGTATATA AAAACTTTCT TTGACAAAAT ATTTATCCTC
  TTAATTATAT ACCTTCTTGC CATTTTTATG TTTTTGGAAA CATTCTCCTC CTCTGTGTGC
  AGAAAACTCC AACCAGCAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss380379536	MGP_WTSI_10_51199679	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs217777198					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379536	MGP_WTSI_10_51199679	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51355969 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	739 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	788 bp upstream
Rr431273	regulatory region 431273	600 bp proximal
Tssr93232	transcription start site region 93232	363 bp upstream
Tssr93233	transcription start site region 93233	940 bp upstream
Tssr93234	transcription start site region 93234	966 bp upstream
Tssr93235	transcription start site region 93235	1259 bp upstream
Tssr93236	transcription start site region 93236	1745 bp upstream
Tssr93237	transcription start site region 93237	1784 bp upstream
Tssr93238	transcription start site region 93238	1808 bp upstream
Tssr93239	transcription start site region 93239	1833 bp upstream
Tssr93240	transcription start site region 93240	1850 bp upstream
Tssr93241	transcription start site region 93241	1872 bp upstream
Tssr93242	transcription start site region 93242	1912 bp upstream
Tssr97553	transcription start site region 97553	561 bp downstream